Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DWZ06_14725 | Not Available | Negative | 3564087 - 3566411 | 86944.2 |
| abc transporter permease | DWZ06_14730 | Not Available | Negative | 3566426 - 3568738 | 87457.1 |
| abc transporter atp-binding protein | DWZ06_14735 | Not Available | Negative | 3568758 - 3569432 | 24853.2 |
| abc transporter permease | DWZ06_14740 | Not Available | Negative | 3569467 - 3571776 | 86414.7 |
| m3 family peptidase | DWZ06_14745 | Not Available | Positive | 3572098 - 3574203 | 79164.9 |
| acyltransferase | DWZ06_14750 | Not Available | Positive | 3574384 - 3575544 | 44353.2 |
| hypothetical protein | DWZ06_14755 | Not Available | Negative | 3575651 - 3576505 | 31763.9 |
| hypothetical protein | DWZ06_14760 | Not Available | Positive | 3576512 - 3576742 | 9075.28 |
| glycosyltransferase | DWZ06_14765 | Not Available | Negative | 3576646 - 3577359 | 27581.0 |
| glycosyltransferase | DWZ06_14770 | Not Available | Negative | 3577391 - 3578563 | 45303.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

