Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_14675 | Not Available | Negative | 3542520 - 3544160 | 61732.4 |
| tonb-dependent receptor | DWZ06_14680 | Not Available | Negative | 3544181 - 3547204 | 111949.0 |
| duf1624 domain-containing protein | DWZ06_14685 | Not Available | Negative | 3547280 - 3548398 | 41672.0 |
| alpha-n-acetylglucosaminidase | DWZ06_14690 | Not Available | Negative | 3548406 - 3550670 | 87240.9 |
| hybrid sensor histidine kinase/response regulator | DWZ06_14695 | Not Available | Negative | 3550753 - 3554973 | 162667.0 |
| rlua family pseudouridine synthase | DWZ06_14700 | Not Available | Negative | 3556006 - 3556932 | 35718.2 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | DWZ06_14705 | Not Available | Negative | 3556977 - 3558398 | 54000.1 |
| pyruvate, phosphate dikinase | DWZ06_14710 | Not Available | Positive | 3558597 - 3561323 | 100098.0 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | DWZ06_14715 | Not Available | Positive | 3561456 - 3563312 | 68749.1 |
| hypothetical protein | DWZ06_14720 | Not Available | Positive | 3563589 - 3564026 | 17467.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

