Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | DWZ06_14620 | Not Available | Positive | 3524032 - 3524859 | 30381.9 |
| duf3237 family protein | DWZ06_14625 | Not Available | Positive | 3524856 - 3525254 | 14589.6 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_14630 | Not Available | Negative | 3525360 - 3526970 | 61576.4 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_14635 | Not Available | Negative | 3526989 - 3530162 | 117163.0 |
| hypothetical protein | DWZ06_14640 | Not Available | Positive | 3530392 - 3532899 | 95948.6 |
| histidine-type phosphatase | DWZ06_14650 | Not Available | Negative | 3533814 - 3535553 | 66666.6 |
| glycoside hydrolase family 92 protein | DWZ06_14655 | Not Available | Negative | 3535567 - 3537831 | 85795.6 |
| glycoside hydrolase family 28 protein | DWZ06_14660 | Not Available | Negative | 3537843 - 3539255 | 52158.1 |
| glycoside hydrolase family 92 protein | DWZ06_14665 | Not Available | Negative | 3539281 - 3541614 | 88755.1 |
| glycerophosphodiester phosphodiesterase | DWZ06_14670 | Not Available | Negative | 3541634 - 3542446 | 31017.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

