Phocaeicola vulgatus strain AF29-13

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF29-13 is a Gram-positive, rod-shaped bacterium classified as an anaerobe, which means it thrives in environments devoid of oxygen. This strain is of particular interest due to its association with Homo sapiens, indicating it is host-associated. Phocaeicola vulgatus is characterized by its single-cell arrangement and lack of mobility, as it does not possess flagella. The strain is mesophilic, suggesting it prefers moderate temperature ranges for optimal growth. With a unique biotic relationship as a free-living organism, it may play a role in the human microbiome, contributing to the complex interactions within the host's gut environment. Phocaeicola vulgatus strain AF29-13 contains one replicon and has a double membrane structure, which is typical for many bacteria and may influence its resilience and adaptability in host-associated habitats. The study of this strain can offer insights into the microbial communities residing in the human gut and their implications for human health. Given its anaerobic nature and role in the human microbiome, Phocaeicola vulgatus may contribute to various metabolic processes, including the fermentation of dietary fibers, which are essential for gut health. Understanding the specific functions and interactions of this bacterium within the microbiome could provide valuable information regarding the maintenance of gut homeostasis and the potential impact on human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
Strainstrain AF29-13

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF29-13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF29-13 AF29-13.Scaf129, whole genome

Gene Summary

Adenine Count

1434359 bp

Thymine Count

1406831 bp

Guanine Count

1033248 bp

Cytosine Count

1035378 bp

Genome Length

4910436 bp

Protein-coding Genes

3936 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha/beta hydrolaseDWZ06_14620Not AvailablePositive3524032 - 352485930381.9
duf3237 family proteinDWZ06_14625Not AvailablePositive3524856 - 352525414589.6
ragb/susd family nutrient uptake outer membrane proteinDWZ06_14630Not AvailableNegative3525360 - 352697061576.4
susc/raga family tonb-linked outer membrane proteinDWZ06_14635Not AvailableNegative3526989 - 3530162117163.0
hypothetical proteinDWZ06_14640Not AvailablePositive3530392 - 353289995948.6
histidine-type phosphataseDWZ06_14650Not AvailableNegative3533814 - 353555366666.6
glycoside hydrolase family 92 proteinDWZ06_14655Not AvailableNegative3535567 - 353783185795.6
glycoside hydrolase family 28 proteinDWZ06_14660Not AvailableNegative3537843 - 353925552158.1
glycoside hydrolase family 92 proteinDWZ06_14665Not AvailableNegative3539281 - 354161488755.1
glycerophosphodiester phosphodiesteraseDWZ06_14670Not AvailableNegative3541634 - 354244631017.0

Displaying genes 2801 – 2810 of 4010 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.