Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphopyruvate hydratase | DWZ06_14570 | Not Available | Negative | 3504337 - 3505617 | 46033.9 |
| peroxiredoxin | DWZ06_14575 | Not Available | Positive | 3505858 - 3506424 | 21053.1 |
| alkyl hydroperoxide reductase subunit f | DWZ06_14580 | Not Available | Positive | 3506437 - 3507987 | 56004.4 |
| laci family transcriptional regulator | DWZ06_14585 | Not Available | Positive | 3508135 - 3509151 | 37912.1 |
| glycosyl hydrolase family 35 | DWZ06_14590 | Not Available | Negative | 3509239 - 3511593 | 88788.1 |
| beta-galactosidase | DWZ06_14595 | Not Available | Negative | 3511595 - 3514375 | 106447.0 |
| esterase | DWZ06_14600 | Not Available | Negative | 3514478 - 3515635 | 44357.2 |
| hypothetical protein | DWZ06_14605 | Not Available | Negative | 3515652 - 3517700 | 77969.8 |
| hybrid sensor histidine kinase/response regulator | DWZ06_14610 | Not Available | Positive | 3517827 - 3521690 | 147699.0 |
| hypothetical protein | DWZ06_14615 | Not Available | Negative | 3521983 - 3523851 | 69782.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

