Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nyn domain-containing protein | DWZ06_01395 | Not Available | Negative | 316863 - 317567 | 26217.5 |
| dna-binding protein | DWZ06_01400 | Not Available | Negative | 317624 - 317917 | 11678.1 |
| phosphoribosyltransferase | DWZ06_01405 | Not Available | Negative | 318154 - 319071 | 35139.6 |
| dna-binding protein | DWZ06_01410 | Not Available | Positive | 319201 - 319494 | 11511.1 |
| dna-binding protein | DWZ06_01415 | Not Available | Positive | 319491 - 319793 | 12030.7 |
| hypothetical protein | DWZ06_01420 | Not Available | Negative | 320433 - 320720 | 11244.7 |
| hnh endonuclease | DWZ06_01425 | Not Available | Positive | 320990 - 321286 | 11204.9 |
| hypothetical protein | DWZ06_01430 | Not Available | Negative | 321521 - 321709 | 7221.75 |
| duf4121 family protein | DWZ06_01435 | Not Available | Positive | 321744 - 322523 | 30635.2 |
| dna primase | DWZ06_01440 | Not Available | Negative | 322624 - 323487 | 33028.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

