Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DWZ06_14470 | Not Available | Positive | 3471710 - 3475102 | 124382.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ06_14475 | Not Available | Positive | 3475138 - 3476997 | 70276.5 |
| aaa family atpase | DWZ06_14480 | Not Available | Positive | 3477324 - 3478517 | 45849.4 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_14485 | Not Available | Positive | 3478713 - 3481868 | 114886.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ06_14490 | Not Available | Positive | 3481890 - 3483860 | 74011.3 |
| hypothetical protein | DWZ06_14495 | Not Available | Negative | 3484174 - 3484638 | 17243.6 |
| acetyl-coa synthetase | DWZ06_14500 | Not Available | Negative | 3484683 - 3486335 | 62298.4 |
| cupin domain-containing protein | DWZ06_14505 | Not Available | Negative | 3486419 - 3486973 | 20522.8 |
| duf1893 domain-containing protein | DWZ06_14510 | Not Available | Negative | 3487151 - 3487570 | 15717.2 |
| 4fe-4s dicluster domain-containing protein | DWZ06_14515 | Not Available | Negative | 3487588 - 3489114 | 55349.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

