Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd family outer membrane lipoprotein nanu | DWZ06_14410 | Not Available | Negative | 3450443 - 3452032 | 60057.3 |
| tonb-dependent receptor | DWZ06_14415 | Not Available | Negative | 3452048 - 3455368 | 122790.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_14420 | Not Available | Negative | 3455808 - 3457793 | 74157.0 |
| tonb-dependent receptor | DWZ06_14425 | Not Available | Negative | 3457809 - 3461009 | 118383.0 |
| glpgli family protein | DWZ06_14435 | Not Available | Negative | 3461638 - 3463344 | 63473.1 |
| dna-binding protein | DWZ06_14440 | Not Available | Negative | 3463423 - 3464061 | 24089.6 |
| hypothetical protein | DWZ06_14445 | Not Available | Positive | 3464063 - 3464269 | 7958.76 |
| virulence-associated protein e | DWZ06_14450 | Not Available | Positive | 3464375 - 3465526 | 45299.6 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DWZ06_14460 | Not Available | Positive | 3469358 - 3471244 | 72167.2 |
| hypothetical protein | DWZ06_14465 | Not Available | Positive | 3471459 - 3471716 | 9947.49 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

