Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp synthase f0 subunit c | DWZ06_14255 | Not Available | Positive | 3411669 - 3411923 | 8151.6 |
| atp synthase subunit b | DWZ06_14260 | Not Available | Positive | 3411934 - 3412434 | 18885.0 |
| f0f1 atp synthase subunit delta | DWZ06_14265 | Not Available | Positive | 3412440 - 3412997 | 20992.7 |
| atp synthase subunit alpha | DWZ06_14270 | Not Available | Positive | 3413119 - 3414711 | 57717.7 |
| atp synthase subunit gamma | DWZ06_14275 | Not Available | Positive | 3414714 - 3415583 | 32458.6 |
| class i sam-dependent methyltransferase | DWZ06_14280 | Not Available | Negative | 3415671 - 3416405 | 27883.3 |
| atpase | DWZ06_14285 | Not Available | Positive | 3416656 - 3418278 | 62358.5 |
| vwa domain-containing protein | DWZ06_14290 | Not Available | Positive | 3418250 - 3419563 | 51632.9 |
| porin | DWZ06_14295 | Not Available | Positive | 3419707 - 3420858 | 43114.0 |
| 2-aminoethylphosphonate--pyruvate transaminase | DWZ06_14300 | Not Available | Negative | 3420926 - 3422014 | 40707.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

