Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_14205 | Not Available | Positive | 3400778 - 3401215 | 16855.3 |
| udp-2,3-diacylglucosamine diphosphatase | DWZ06_14210 | Not Available | Positive | 3401392 - 3402195 | 31136.1 |
| glycosyltransferase | DWZ06_14215 | Not Available | Positive | 3402192 - 3403319 | 43537.6 |
| rna degradosome polyphosphate kinase | DWZ06_14220 | Not Available | Positive | 3403455 - 3405521 | 79791.8 |
| ppx/gppa family phosphatase | DWZ06_14225 | Not Available | Positive | 3405523 - 3406437 | 34342.0 |
| peptidase m28 | DWZ06_14230 | Not Available | Positive | 3406580 - 3408127 | 57370.0 |
| atp synthase subunit beta | DWZ06_14235 | Not Available | Positive | 3408323 - 3409858 | 56123.4 |
| hypothetical protein | DWZ06_14240 | Not Available | Positive | 3409867 - 3410121 | 9226.99 |
| hypothetical protein | DWZ06_14245 | Not Available | Positive | 3410131 - 3410544 | 16367.0 |
| atp synthase f0 subunit a | DWZ06_14250 | Not Available | Positive | 3410546 - 3411637 | 40577.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

