Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ompa family protein | DWZ06_14155 | Not Available | Positive | 3390670 - 3391389 | 24484.1 |
| monofunctional biosynthetic peptidoglycan transglycosylase | DWZ06_14160 | Not Available | Positive | 3391518 - 3392234 | 27664.0 |
| duf1460 domain-containing protein | DWZ06_14165 | Not Available | Negative | 3392212 - 3393090 | 33182.4 |
| biotin/lipoyl-binding protein | DWZ06_14170 | Not Available | Negative | 3393216 - 3394991 | 66738.8 |
| rna polymerase sigma factor | DWZ06_14175 | Not Available | Negative | 3395181 - 3395684 | 19667.6 |
| trimeric intracellular cation channel family protein | DWZ06_14180 | Not Available | Negative | 3395843 - 3396457 | 22186.8 |
| udp-n-acetyl glucosamine 2-epimerase | DWZ06_14185 | Not Available | Positive | 3396541 - 3397629 | 40250.0 |
| hypothetical protein | DWZ06_14190 | Not Available | Positive | 3397752 - 3398489 | 27816.9 |
| dna-binding response regulator | DWZ06_14195 | Not Available | Positive | 3398710 - 3399387 | 25927.3 |
| sensor histidine kinase | DWZ06_14200 | Not Available | Positive | 3399388 - 3400674 | 49706.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

