Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fructose-6-phosphate aldolase | DWZ06_14105 | Not Available | Positive | 3379486 - 3380142 | 23599.5 |
| arac family transcriptional regulator | DWZ06_14110 | Not Available | Positive | 3380294 - 3381217 | 36234.0 |
| hypothetical protein | DWZ06_14115 | Not Available | Negative | 3381292 - 3382119 | 31935.4 |
| penicillin-binding protein | DWZ06_14120 | Not Available | Negative | 3382325 - 3384652 | 88345.2 |
| aspartate carbamoyltransferase | DWZ06_14125 | Not Available | Positive | 3384813 - 3385754 | 36259.7 |
| aspartate carbamoyltransferase regulatory subunit | DWZ06_14130 | Not Available | Positive | 3385763 - 3386230 | 17408.3 |
| flavin reductase family protein | DWZ06_14135 | Not Available | Positive | 3386236 - 3386823 | 21914.5 |
| port family protein | DWZ06_14140 | Not Available | Positive | 3386833 - 3387552 | 27401.5 |
| serine hydroxymethyltransferase | DWZ06_14145 | Not Available | Positive | 3387799 - 3389079 | 46829.6 |
| mate family efflux transporter | DWZ06_14150 | Not Available | Positive | 3389278 - 3390621 | 49290.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

