Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,4-alpha-glucan-branching enzyme | DWZ06_14045 | Not Available | Negative | 3369779 - 3371806 | 78116.2 |
| yhch/yjgk/yial family protein | DWZ06_14050 | Not Available | Negative | 3371835 - 3372275 | 16248.5 |
| duf2461 domain-containing protein | DWZ06_14055 | Not Available | Negative | 3372312 - 3372977 | 25851.7 |
| inositol monophosphatase | DWZ06_14060 | Not Available | Negative | 3373053 - 3373841 | 29098.5 |
| phosphatidylinositol-4-phosphate 5-kinase | DWZ06_14065 | Not Available | Negative | 3373849 - 3374967 | 42496.8 |
| insulinase family protein | DWZ06_14070 | Not Available | Negative | 3375039 - 3376325 | 48625.5 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DWZ06_14075 | Not Available | Negative | 3376326 - 3377084 | 28075.6 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | DWZ06_14080 | Not Available | Positive | 3377163 - 3377537 | 14212.0 |
| transporter | DWZ06_14095 | Not Available | Positive | 3378185 - 3378418 | 8866.64 |
| abc transporter permease | DWZ06_14100 | Not Available | Positive | 3378415 - 3379389 | 36423.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

