Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3945 domain-containing protein | DWZ06_01345 | Not Available | Positive | 308120 - 309958 | 69704.6 |
| duf4099 domain-containing protein | DWZ06_01350 | Not Available | Positive | 310012 - 310287 | 10129.2 |
| dna topoisomerase iii | DWZ06_01355 | Not Available | Positive | 310360 - 312132 | 66569.5 |
| hypothetical protein | DWZ06_01360 | Not Available | Positive | 312432 - 312644 | 7770.42 |
| hypothetical protein | DWZ06_01365 | Not Available | Positive | 312663 - 312872 | 7957.64 |
| prtrc system protein e | DWZ06_01370 | Not Available | Positive | 312892 - 313890 | 37069.2 |
| prtrc system protein c | DWZ06_01375 | Not Available | Positive | 313912 - 314133 | 8347.99 |
| hypothetical protein | DWZ06_01380 | Not Available | Positive | 314170 - 315279 | 43115.3 |
| prtrc system protein b | DWZ06_01385 | Not Available | Positive | 315290 - 315991 | 26803.1 |
| prtrc system thif family protein | DWZ06_01390 | Not Available | Positive | 315988 - 316779 | 29573.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

