Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit delta | DWZ06_13995 | Not Available | Negative | 3360805 - 3361821 | 38857.2 |
| amp nucleosidase | DWZ06_14000 | Not Available | Negative | 3361833 - 3362609 | 29142.2 |
| hypothetical protein | DWZ06_14005 | Not Available | Positive | 3362667 - 3363116 | 17607.4 |
| hypothetical protein | DWZ06_14010 | Not Available | Negative | 3363217 - 3364008 | 30517.8 |
| nif3-like dinuclear metal center hexameric protein | DWZ06_14015 | Not Available | Negative | 3364017 - 3365111 | 40621.9 |
| hypothetical protein | DWZ06_14020 | Not Available | Negative | 3365173 - 3365451 | 10839.2 |
| abc transporter permease | DWZ06_14025 | Not Available | Negative | 3365510 - 3366307 | 29543.7 |
| atp-binding cassette domain-containing protein | DWZ06_14030 | Not Available | Negative | 3366316 - 3366936 | 22754.8 |
| proline--trna ligase | DWZ06_14035 | Not Available | Negative | 3367019 - 3368509 | 56833.0 |
| hypothetical protein | DWZ06_14040 | Not Available | Negative | 3368624 - 3369775 | 44092.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

