Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 3352301 - 3352377 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 3352395 - 3352471 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 3352489 - 3352565 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 3352583 - 3352659 | Not Available |
| 4-hydroxy-tetrahydrodipicolinate synthase | DWZ06_13960 | Not Available | Negative | 3353328 - 3354221 | 32789.2 |
| dna ligase (nad(+)) liga | DWZ06_13965 | Not Available | Negative | 3354323 - 3356320 | 75175.7 |
| trna (guanosine(37)-n1)-methyltransferase trmd | DWZ06_13970 | Not Available | Positive | 3356419 - 3357093 | 25423.7 |
| dihydroorotate dehydrogenase | DWZ06_13975 | Not Available | Negative | 3357459 - 3358370 | 32305.3 |
| dihydroorotate dehydrogenase electron transfer subunit | DWZ06_13980 | Not Available | Negative | 3358358 - 3359137 | 28483.2 |
| xre family transcriptional regulator | DWZ06_13985 | Not Available | Negative | 3359231 - 3359683 | 17319.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

