Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s1 | DWZ06_13830 | Not Available | Positive | 3328644 - 3330440 | 67091.1 |
| cold shock domain-containing protein | DWZ06_13835 | Not Available | Positive | 3330690 - 3331136 | 17045.4 |
| ribonuclease z | DWZ06_13840 | Not Available | Positive | 3331207 - 3332136 | 35255.8 |
| rna polymerase sigma factor | DWZ06_13845 | Not Available | Positive | 3332170 - 3332721 | 21615.8 |
| hypothetical protein | DWZ06_13850 | Not Available | Positive | 3332766 - 3333143 | 14624.4 |
| hypothetical protein | DWZ06_13855 | Not Available | Positive | 3333155 - 3333601 | 17649.5 |
| duf4373 domain-containing protein | DWZ06_13865 | Not Available | Positive | 3336623 - 3337075 | 17340.4 |
| duf4373 domain-containing protein | DWZ06_13870 | Not Available | Positive | 3337104 - 3338198 | 41870.8 |
| dna primase | DWZ06_13875 | Not Available | Positive | 3338355 - 3339272 | 34673.2 |
| hypothetical protein | DWZ06_13880 | Not Available | Positive | 3339292 - 3339729 | 16373.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

