Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4251 domain-containing protein | DWZ06_13780 | Not Available | Positive | 3320992 - 3321546 | 20119.4 |
| duf4251 domain-containing protein | DWZ06_13785 | Not Available | Positive | 3321780 - 3322337 | 20164.2 |
| duf4136 domain-containing protein | DWZ06_13790 | Not Available | Positive | 3322363 - 3322995 | 24210.4 |
| porin family protein | DWZ06_13795 | Not Available | Positive | 3323008 - 3323646 | 24663.5 |
| histidine kinase | DWZ06_13800 | Not Available | Positive | 3323763 - 3324806 | 40167.1 |
| dna-binding response regulator | DWZ06_13805 | Not Available | Positive | 3324799 - 3325584 | 30175.5 |
| atpase | DWZ06_13810 | Not Available | Positive | 3325740 - 3326579 | 30757.1 |
| n-acetylmuramic acid 6-phosphate etherase | DWZ06_13815 | Not Available | Positive | 3326576 - 3327412 | 30438.0 |
| simpl domain-containing protein | DWZ06_13820 | Not Available | Positive | 3327416 - 3328117 | 26282.6 |
| hypothetical protein | DWZ06_13825 | Not Available | Negative | 3328208 - 3328447 | 9398.65 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

