Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cdp-alcohol phosphatidyltransferase family protein | DWZ06_13725 | Not Available | Negative | 3308916 - 3309866 | 37224.4 |
| hypothetical protein | DWZ06_13730 | Not Available | Negative | 3309874 - 3310725 | 31795.0 |
| ndp-sugar synthase | DWZ06_13735 | Not Available | Negative | 3310745 - 3311455 | 26297.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DWZ06_13740 | Not Available | Negative | 3311497 - 3312597 | 40605.4 |
| duf4837 family protein | DWZ06_13745 | Not Available | Negative | 3312624 - 3313688 | 40606.1 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DWZ06_13750 | Not Available | Negative | 3313714 - 3314763 | 39554.0 |
| duf4922 domain-containing protein | DWZ06_13755 | Not Available | Positive | 3314850 - 3317321 | 94542.1 |
| spoiid/lytb domain-containing protein | DWZ06_13760 | Not Available | Positive | 3317378 - 3318694 | 49960.9 |
| mfs transporter | DWZ06_13765 | Not Available | Positive | 3318752 - 3320026 | 47720.5 |
| hypothetical protein | DWZ06_13775 | Not Available | Negative | 3320330 - 3320875 | 20998.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

