Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease iii | DWZ06_13675 | Not Available | Negative | 3299586 - 3300341 | 29696.0 |
| preprotein translocase subunit secg | DWZ06_13680 | Not Available | Negative | 3300505 - 3300870 | 12571.2 |
| tetratricopeptide repeat protein | DWZ06_13685 | Not Available | Negative | 3300876 - 3301628 | 29436.1 |
| hypothetical protein | DWZ06_13690 | Not Available | Negative | 3301645 - 3302172 | 19738.6 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_13695 | Not Available | Negative | 3302159 - 3303424 | 46861.1 |
| inositol-3-phosphate synthase | DWZ06_13700 | Not Available | Negative | 3303591 - 3304898 | 48823.8 |
| ribokinase | DWZ06_13705 | Not Available | Positive | 3305034 - 3305930 | 33171.6 |
| sugar mfs transporter | DWZ06_13710 | Not Available | Negative | 3305985 - 3307184 | 44345.3 |
| had family hydrolase | DWZ06_13715 | Not Available | Negative | 3307191 - 3307913 | 27076.8 |
| upf0104 family protein | DWZ06_13720 | Not Available | Negative | 3307918 - 3308919 | 37585.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

