Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s41 family peptidase | DWZ06_13625 | Not Available | Positive | 3292594 - 3294342 | 64897.7 |
| 5-formyltetrahydrofolate cyclo-ligase | DWZ06_13630 | Not Available | Positive | 3294266 - 3294796 | 20433.5 |
| duf721 domain-containing protein | DWZ06_13635 | Not Available | Negative | 3294962 - 3295252 | 11221.9 |
| dna replication/repair protein recf | DWZ06_13640 | Not Available | Negative | 3295249 - 3296364 | 42967.7 |
| hypothetical protein | DWZ06_13645 | Not Available | Positive | 3296517 - 3297194 | 24504.2 |
| 6,7-dimethyl-8-ribityllumazine synthase | DWZ06_13650 | Not Available | Positive | 3297287 - 3297793 | 18128.7 |
| Trna-tyr | Not Available | Not Available | Positive | 3297905 - 3297990 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3297997 - 3298072 | Not Available |
| pirin family protein | DWZ06_13665 | Not Available | Positive | 3298209 - 3298913 | 26517.3 |
| hypothetical protein | DWZ06_13670 | Not Available | Negative | 3299136 - 3299429 | 11293.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

