Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase | DWZ06_13525 | Not Available | Negative | 3271605 - 3272642 | 38584.8 |
| carbohydrate kinase | DWZ06_13530 | Not Available | Negative | 3272682 - 3273602 | 34622.3 |
| sis domain-containing protein | DWZ06_13535 | Not Available | Negative | 3273713 - 3274315 | 21797.5 |
| tigr00730 family rossman fold protein | DWZ06_13540 | Not Available | Negative | 3274333 - 3274869 | 19870.1 |
| insulinase family protein | DWZ06_13545 | Not Available | Positive | 3274971 - 3276191 | 46465.1 |
| glycoside hydrolase family 95 protein | DWZ06_13550 | Not Available | Positive | 3276290 - 3278746 | 92116.2 |
| hybrid sensor histidine kinase/response regulator | DWZ06_13555 | Not Available | Positive | 3278951 - 3282838 | 148480.0 |
| Trna-thr | Not Available | Not Available | Positive | 3283178 - 3283251 | Not Available |
| hypothetical protein | DWZ06_13565 | Not Available | Positive | 3283256 - 3283504 | 9849.11 |
| duf4199 domain-containing protein | DWZ06_13570 | Not Available | Positive | 3283511 - 3284044 | 20538.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

