Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nerd domain-containing protein | DWZ06_01295 | Not Available | Positive | 298784 - 299335 | 21024.2 |
| pseudohemocyanin | DWZ06_01300 | Not Available | Positive | 299655 - 300635 | 38244.2 |
| hypothetical protein | DWZ06_01305 | Not Available | Positive | 300708 - 300914 | 8232.15 |
| tetr/acrr family transcriptional regulator | DWZ06_01310 | Not Available | Positive | 301115 - 301735 | 24472.7 |
| stld/darb family beta-ketosynthase | DWZ06_01315 | Not Available | Positive | 301741 - 302880 | 42341.1 |
| tetr/acrr family transcriptional regulator | DWZ06_01320 | Not Available | Positive | 303120 - 303644 | 20235.6 |
| hypothetical protein | DWZ06_01325 | Not Available | Negative | 303709 - 303942 | 8885.28 |
| response regulator | DWZ06_01330 | Not Available | Positive | 303869 - 306190 | 87759.9 |
| sigma-54-dependent fis family transcriptional regulator | DWZ06_01335 | Not Available | Positive | 306171 - 307490 | 49571.6 |
| hypothetical protein | DWZ06_01340 | Not Available | Negative | 307677 - 308024 | 13524.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

