Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | DWZ06_13470 | Not Available | Positive | 3254163 - 3255773 | 62418.3 |
| fimbrillin family protein | DWZ06_13475 | Not Available | Positive | 3256071 - 3257066 | 37275.4 |
| hypothetical protein | DWZ06_13480 | Not Available | Positive | 3257063 - 3258376 | 47438.9 |
| hypothetical protein | DWZ06_13485 | Not Available | Negative | 3258504 - 3260117 | 60890.3 |
| is1182 family transposase | DWZ06_13495 | Not Available | Negative | 3261471 - 3263126 | 65387.9 |
| cell surface protein | DWZ06_13500 | Not Available | Negative | 3263299 - 3266025 | 97952.1 |
| arac family transcriptional regulator | DWZ06_13505 | Not Available | Negative | 3266087 - 3266569 | 18490.2 |
| 4fe-4s dicluster domain-containing protein | DWZ06_13510 | Not Available | Positive | 3267162 - 3267941 | 28476.2 |
| trna 2-thiouridine(34) synthase mnma | DWZ06_13515 | Not Available | Positive | 3267941 - 3269068 | 42775.5 |
| aminopeptidase | DWZ06_13520 | Not Available | Positive | 3269072 - 3271594 | 97379.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

