Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | DWZ06_13415 | Not Available | Positive | 3239274 - 3239486 | 7789.65 |
| atp-dependent rna helicase | DWZ06_13420 | Not Available | Positive | 3239748 - 3241622 | 70716.0 |
| s46 family peptidase | DWZ06_13425 | Not Available | Negative | 3241943 - 3244069 | 80074.8 |
| tigr00341 family protein | DWZ06_13430 | Not Available | Negative | 3244074 - 3245438 | 50535.2 |
| lipopolysaccharide biosynthesis protein | DWZ06_13435 | Not Available | Negative | 3245441 - 3246886 | 54344.9 |
| holliday junction branch migration dna helicase ruvb | DWZ06_13440 | Not Available | Negative | 3246890 - 3247918 | 38022.6 |
| site-specific integrase | DWZ06_13445 | Not Available | Positive | 3248045 - 3249163 | 43299.0 |
| hypothetical protein | DWZ06_13455 | Not Available | Positive | 3249565 - 3252693 | 117178.0 |
| hypothetical protein | DWZ06_13460 | Not Available | Positive | 3252782 - 3253897 | 42026.7 |
| hypothetical protein | DWZ06_13465 | Not Available | Negative | 3253894 - 3254115 | 8588.52 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

