Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 3231158 - 3231234 | Not Available |
| calcium-translocating p-type atpase, pmca-type | DWZ06_13365 | Not Available | Positive | 3231390 - 3234020 | 97112.8 |
| had family phosphatase | DWZ06_13370 | Not Available | Positive | 3234048 - 3234662 | 24088.8 |
| bifunctional riboflavin kinase/fad synthetase | DWZ06_13375 | Not Available | Positive | 3234662 - 3235582 | 35285.5 |
| duf3836 domain-containing protein | DWZ06_13385 | Not Available | Positive | 3235961 - 3236380 | 16015.9 |
| hypothetical protein | DWZ06_13390 | Not Available | Positive | 3236380 - 3236679 | 11054.1 |
| cpbp family intramembrane metalloprotease | DWZ06_13395 | Not Available | Positive | 3236852 - 3237682 | 30313.9 |
| duf2975 domain-containing protein | DWZ06_13400 | Not Available | Positive | 3237691 - 3238338 | 23980.7 |
| duf2975 domain-containing protein | DWZ06_13405 | Not Available | Positive | 3238355 - 3239002 | 24199.5 |
| hypothetical protein | DWZ06_13410 | Not Available | Positive | 3239013 - 3239270 | 10168.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

