Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoacid:acceptor oxidoreductase subunit alpha | DWZ06_13310 | Not Available | Negative | 3219171 - 3221018 | 66247.6 |
| Trna-arg | Not Available | Not Available | Positive | 3221429 - 3221503 | Not Available |
| glycine c-acetyltransferase | DWZ06_13320 | Not Available | Negative | 3221571 - 3222761 | 43568.4 |
| nad-dependent epimerase/dehydratase family protein | DWZ06_13325 | Not Available | Positive | 3222932 - 3223885 | 35269.3 |
| sugar kinase | DWZ06_13330 | Not Available | Positive | 3224033 - 3225097 | 38944.4 |
| site-specific dna-methyltransferase | DWZ06_13335 | Not Available | Negative | 3225432 - 3226265 | 31959.6 |
| duf3871 family protein | DWZ06_13340 | Not Available | Negative | 3226328 - 3227350 | 38674.4 |
| zinc ribbon domain-containing protein | DWZ06_13345 | Not Available | Negative | 3227649 - 3229946 | 90354.4 |
| hypothetical protein | DWZ06_13350 | Not Available | Negative | 3230152 - 3230625 | 18427.0 |
| hypothetical protein | DWZ06_13355 | Not Available | Negative | 3230585 - 3230770 | 7335.85 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

