Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | DWZ06_13205 | Not Available | Positive | 3196661 - 3198097 | 53599.5 |
| acyltransferase | DWZ06_13210 | Not Available | Positive | 3198097 - 3199122 | 39504.4 |
| glycosyl transferase | DWZ06_13215 | Not Available | Negative | 3199145 - 3199975 | 31864.5 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | DWZ06_13220 | Not Available | Positive | 3200065 - 3201870 | 70212.3 |
| nad/nadp octopine/nopaline dehydrogenase | DWZ06_13225 | Not Available | Positive | 3201867 - 3202967 | 41186.0 |
| licd family protein | DWZ06_13230 | Not Available | Positive | 3202971 - 3203768 | 31802.5 |
| hemolysin activation protein | DWZ06_13235 | Not Available | Positive | 3203782 - 3204798 | 40425.5 |
| glycosyltransferase | DWZ06_13240 | Not Available | Positive | 3204771 - 3205886 | 42944.4 |
| glycosyltransferase | DWZ06_13245 | Not Available | Positive | 3205899 - 3207161 | 47669.5 |
| glycosyltransferase | DWZ06_13250 | Not Available | Positive | 3207154 - 3207900 | 28692.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

