Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | DWZ06_13155 | Not Available | Negative | 3184262 - 3185500 | 45679.9 |
| 30s ribosome-binding factor rbfa | DWZ06_13160 | Not Available | Negative | 3185510 - 3185845 | 12972.9 |
| methyltransferase | DWZ06_13165 | Not Available | Negative | 3185919 - 3186557 | 24383.5 |
| pyruvate kinase | DWZ06_13170 | Not Available | Negative | 3186573 - 3188036 | 54241.6 |
| type ii 3-dehydroquinate dehydratase | DWZ06_13175 | Not Available | Negative | 3188069 - 3188491 | 15666.9 |
| site-specific tyrosine recombinase xerd | DWZ06_13180 | Not Available | Positive | 3188558 - 3189499 | 36180.1 |
| hypothetical protein | DWZ06_13185 | Not Available | Positive | 3189641 - 3191317 | 60923.9 |
| duf4369 domain-containing protein | DWZ06_13190 | Not Available | Positive | 3191471 - 3192538 | 40431.1 |
| atp-binding protein | DWZ06_13195 | Not Available | Positive | 3192543 - 3194081 | 56291.9 |
| methionine--trna ligase | DWZ06_13200 | Not Available | Positive | 3194537 - 3196579 | 77707.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

