Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recx family transcriptional regulator | DWZ06_13105 | Not Available | Negative | 3173537 - 3174022 | 18883.8 |
| peptide chain release factor n(5)-glutamine methyltransferase | DWZ06_13110 | Not Available | Negative | 3174024 - 3174860 | 31840.4 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | DWZ06_13115 | Not Available | Positive | 3174905 - 3175957 | 39656.4 |
| hypothetical protein | DWZ06_13120 | Not Available | Positive | 3176085 - 3177482 | 52324.1 |
| isoprenyl transferase | DWZ06_13125 | Not Available | Positive | 3177516 - 3178247 | 28065.5 |
| outer membrane protein assembly factor bama | DWZ06_13130 | Not Available | Positive | 3178259 - 3180901 | 100747.0 |
| omph family outer membrane protein | DWZ06_13135 | Not Available | Positive | 3180922 - 3181437 | 18967.6 |
| omph family outer membrane protein | DWZ06_13140 | Not Available | Positive | 3181495 - 3181998 | 19260.2 |
| glutamate racemase | DWZ06_13145 | Not Available | Positive | 3182101 - 3182946 | 31392.0 |
| pyridoxamine kinase | DWZ06_13150 | Not Available | Positive | 3183003 - 3183875 | 32647.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

