Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2149 domain-containing protein | DWZ06_13055 | Not Available | Positive | 3166031 - 3166360 | 12343.8 |
| transposase | DWZ06_13060 | Not Available | Positive | 3166979 - 3168337 | 52888.8 |
| dde transposase | DWZ06_13065 | Not Available | Positive | 3168531 - 3168830 | 11730.2 |
| Trna-leu | Not Available | Not Available | Positive | 3169003 - 3169090 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 3169107 - 3169179 | Not Available |
| l-glyceraldehyde 3-phosphate reductase | DWZ06_13080 | Not Available | Negative | 3169250 - 3170242 | 36721.9 |
| argininosuccinate lyase | DWZ06_13085 | Not Available | Negative | 3170266 - 3171606 | 50610.4 |
| srpbcc family protein | DWZ06_13090 | Not Available | Negative | 3171621 - 3172025 | 15197.6 |
| orotate phosphoribosyltransferase | DWZ06_13095 | Not Available | Negative | 3172123 - 3172761 | 23412.4 |
| comf family protein | DWZ06_13100 | Not Available | Negative | 3172861 - 3173556 | 26096.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

