Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit | DWZ06_01240 | Not Available | Negative | 283203 - 285680 | 92094.9 |
| type vi secretion system needle protein hcp | DWZ06_01245 | Not Available | Positive | 285947 - 286345 | 15172.8 |
| type iv secretion protein rhs | DWZ06_01250 | Not Available | Positive | 286463 - 288271 | 65987.1 |
| hypothetical protein | DWZ06_01255 | Not Available | Positive | 288283 - 289641 | 52295.1 |
| hypothetical protein | DWZ06_01260 | Not Available | Positive | 289687 - 290160 | 17395.3 |
| type vi secretion system contractile sheath protein tssc | DWZ06_01265 | Not Available | Positive | 290166 - 291533 | 51700.8 |
| rhs repeat protein | DWZ06_01270 | Not Available | Positive | 291617 - 295900 | 161908.0 |
| hypothetical protein | DWZ06_01275 | Not Available | Positive | 295891 - 296556 | 25800.8 |
| hypothetical protein | DWZ06_01280 | Not Available | Positive | 296647 - 296904 | 10303.7 |
| atp-binding protein | DWZ06_01290 | Not Available | Positive | 297754 - 298791 | 39279.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

