Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_12950 | Not Available | Positive | 3144064 - 3144249 | 7201.12 |
| cyth domain-containing protein | DWZ06_12955 | Not Available | Positive | 3144320 - 3144790 | 18287.6 |
| tonb-dependent receptor | DWZ06_12960 | Not Available | Positive | 3144880 - 3147354 | 91611.6 |
| rna polymerase sigma factor | DWZ06_12965 | Not Available | Positive | 3147523 - 3148026 | 19779.6 |
| hypothetical protein | DWZ06_12970 | Not Available | Negative | 3148107 - 3148493 | 14818.4 |
| sodium-dependent transporter | DWZ06_12975 | Not Available | Positive | 3148589 - 3149953 | 49159.4 |
| helix-hairpin-helix domain-containing protein | DWZ06_12980 | Not Available | Positive | 3149961 - 3150863 | 35320.7 |
| alkaline phosphatase | DWZ06_12985 | Not Available | Negative | 3150860 - 3152278 | 51603.1 |
| hypothetical protein | DWZ06_12990 | Not Available | Positive | 3152371 - 3152565 | 7560.54 |
| hypothetical protein | DWZ06_12995 | Not Available | Positive | 3152582 - 3153082 | 19273.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

