Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_12900 | Not Available | Positive | 3132726 - 3132884 | 5641.7 |
| arac family transcriptional regulator | DWZ06_12905 | Not Available | Positive | 3133369 - 3133857 | 18915.8 |
| hypothetical protein | DWZ06_12910 | Not Available | Positive | 3133935 - 3136793 | 105417.0 |
| hypothetical protein | DWZ06_12915 | Not Available | Positive | 3136932 - 3137588 | 25861.1 |
| nudix domain-containing protein | DWZ06_12920 | Not Available | Positive | 3137539 - 3138429 | 34211.0 |
| nad-dependent epimerase/dehydratase family protein | DWZ06_12925 | Not Available | Positive | 3138437 - 3139279 | 31290.1 |
| hypothetical protein | DWZ06_12930 | Not Available | Positive | 3139386 - 3139763 | 14077.9 |
| m20/m25/m40 family metallo-hydrolase | DWZ06_12935 | Not Available | Negative | 3139769 - 3140833 | 39103.8 |
| long-chain fatty acid--coa ligase | DWZ06_12940 | Not Available | Positive | 3141047 - 3142852 | 68368.2 |
| pcrf domain-containing protein | DWZ06_12945 | Not Available | Positive | 3142910 - 3144025 | 42549.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

