Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_12850 | Not Available | Positive | 3121303 - 3121926 | 24607.8 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | DWZ06_12855 | Not Available | Positive | 3121935 - 3122498 | 21334.7 |
| duf2795 domain-containing protein | DWZ06_12860 | Not Available | Positive | 3122570 - 3122791 | 8716.91 |
| porin family protein | DWZ06_12865 | Not Available | Positive | 3122955 - 3123554 | 21550.2 |
| primosomal protein n' | DWZ06_12870 | Not Available | Positive | 3123627 - 3126089 | 93875.1 |
| phosphatase | DWZ06_12875 | Not Available | Positive | 3126137 - 3126847 | 26532.1 |
| low molecular weight phosphotyrosine protein phosphatase | DWZ06_12880 | Not Available | Positive | 3126855 - 3127325 | 17874.5 |
| hdig domain-containing protein | DWZ06_12885 | Not Available | Negative | 3127300 - 3129357 | 79191.8 |
| glutamate--trna ligase | DWZ06_12890 | Not Available | Positive | 3129439 - 3130956 | 57905.3 |
| 3-deoxy-d-manno-octulosonic acid transferase | DWZ06_12895 | Not Available | Positive | 3130969 - 3132189 | 46862.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

