Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_12795 | Not Available | Positive | 3110376 - 3110726 | 13439.4 |
| luxr family transcriptional regulator | DWZ06_12800 | Not Available | Negative | 3110667 - 3111431 | 29423.2 |
| b12-binding domain-containing radical sam protein | DWZ06_12805 | Not Available | Negative | 3112290 - 3113927 | 62730.8 |
| n-acetyltransferase | DWZ06_12810 | Not Available | Negative | 3113943 - 3114464 | 20094.9 |
| gnat family n-acetyltransferase | DWZ06_12815 | Not Available | Negative | 3114482 - 3114913 | 16235.8 |
| n-acetyltransferase | DWZ06_12820 | Not Available | Positive | 3115018 - 3115503 | 18784.7 |
| duf488 family protein | DWZ06_12825 | Not Available | Positive | 3115577 - 3115933 | 14248.8 |
| acetyl-coa carboxylase biotin carboxylase subunit | DWZ06_12830 | Not Available | Positive | 3116110 - 3117621 | 57013.6 |
| acetyl-coa carboxylase biotin carboxyl carrier protein subunit | DWZ06_12835 | Not Available | Positive | 3117646 - 3118161 | 19041.9 |
| aminopeptidase | DWZ06_12845 | Not Available | Negative | 3119888 - 3121198 | 50768.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

