Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetate--coa ligase family protein | DWZ06_12730 | Not Available | Positive | 3098603 - 3099898 | 49505.5 |
| hypothetical protein | DWZ06_12735 | Not Available | Positive | 3099949 - 3100524 | 21488.1 |
| fic family protein | DWZ06_12745 | Not Available | Positive | 3102170 - 3102979 | 30839.3 |
| hypothetical protein | DWZ06_12755 | Not Available | Negative | 3103382 - 3104098 | 27254.6 |
| marr family transcriptional regulator | DWZ06_12760 | Not Available | Positive | 3104198 - 3104644 | 17085.9 |
| integrase | DWZ06_12770 | Not Available | Negative | 3106028 - 3106630 | 22624.3 |
| cell filamentation protein fic | DWZ06_12775 | Not Available | Positive | 3106599 - 3107069 | 18125.9 |
| duf3784 domain-containing protein | DWZ06_12780 | Not Available | Positive | 3107081 - 3107398 | 11649.9 |
| hypothetical protein | DWZ06_12785 | Not Available | Positive | 3107703 - 3108041 | 12594.3 |
| tonb-dependent receptor | DWZ06_12790 | Not Available | Positive | 3108066 - 3110372 | 86186.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

