Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase family protein | DWZ06_12680 | Not Available | Positive | 3085679 - 3086371 | 26617.2 |
| outer membrane lipoprotein carrier protein lola | DWZ06_12685 | Not Available | Positive | 3087115 - 3087750 | 24793.4 |
| hypothetical protein | DWZ06_12690 | Not Available | Positive | 3087725 - 3088267 | 20783.8 |
| hydroxymyristoyl-acp dehydratase | DWZ06_12695 | Not Available | Positive | 3088269 - 3088649 | 14362.7 |
| hypothetical protein | DWZ06_12700 | Not Available | Positive | 3088758 - 3089042 | 9684.51 |
| duf4221 domain-containing protein | DWZ06_12705 | Not Available | Positive | 3089115 - 3090299 | 46111.9 |
| duf2062 domain-containing protein | DWZ06_12710 | Not Available | Positive | 3090421 - 3091614 | 44766.8 |
| methyltransferase domain-containing protein | DWZ06_12715 | Not Available | Positive | 3091607 - 3095461 | 146353.0 |
| nad(p)/fad-dependent oxidoreductase | DWZ06_12720 | Not Available | Positive | 3095454 - 3096944 | 56620.9 |
| choloylglycine hydrolase | DWZ06_12725 | Not Available | Positive | 3096937 - 3098601 | 63145.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

