Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein | DWZ06_12630 | Not Available | Positive | 3077445 - 3077696 | 9584.45 |
| acyltransferase | DWZ06_12635 | Not Available | Positive | 3077696 - 3078580 | 34490.0 |
| methyltransferase domain-containing protein | DWZ06_12640 | Not Available | Positive | 3078594 - 3079664 | 40576.6 |
| hydroxymyristoyl-acp dehydratase | DWZ06_12645 | Not Available | Positive | 3079661 - 3080098 | 16452.2 |
| acyl-coa thioesterase | DWZ06_12650 | Not Available | Positive | 3080095 - 3080538 | 17306.7 |
| beta-acp synthase | DWZ06_12655 | Not Available | Positive | 3080523 - 3082253 | 63634.1 |
| acyl carrier protein | DWZ06_12660 | Not Available | Positive | 3082259 - 3082516 | 9574.45 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | DWZ06_12665 | Not Available | Positive | 3082513 - 3083703 | 42006.0 |
| 3-oxoacyl-acp synthase | DWZ06_12670 | Not Available | Positive | 3083707 - 3084660 | 35335.4 |
| kila-n domain-containing protein | DWZ06_12675 | Not Available | Positive | 3084774 - 3085628 | 33301.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

