Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | DWZ06_12580 | Not Available | Positive | 3056379 - 3060605 | 161303.0 |
| glycoside hydrolase family 97 protein | DWZ06_12585 | Not Available | Positive | 3060738 - 3062666 | 72937.5 |
| tonb-dependent receptor | DWZ06_12590 | Not Available | Positive | 3063106 - 3066315 | 118845.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_12595 | Not Available | Positive | 3066335 - 3068086 | 66225.7 |
| hypothetical protein | DWZ06_12600 | Not Available | Positive | 3068111 - 3069889 | 64373.9 |
| arabinan endo-1,5-alpha-l-arabinosidase | DWZ06_12605 | Not Available | Positive | 3069963 - 3071846 | 70248.0 |
| cysteine--trna ligase | DWZ06_12610 | Not Available | Positive | 3072221 - 3073702 | 56272.0 |
| aromatic amino acid lyase | DWZ06_12615 | Not Available | Positive | 3073890 - 3075461 | 59097.5 |
| 3-oxoacyl-acp reductase fabg | DWZ06_12620 | Not Available | Positive | 3075458 - 3076186 | 26411.8 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | DWZ06_12625 | Not Available | Positive | 3076194 - 3077423 | 44242.6 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

