Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate reductase | DWZ06_12470 | Not Available | Positive | 3023373 - 3024128 | 27422.6 |
| s26 family signal peptidase | DWZ06_12475 | Not Available | Positive | 3024132 - 3025556 | 55195.4 |
| signal peptidase i | DWZ06_12480 | Not Available | Positive | 3025594 - 3026457 | 32796.6 |
| hypothetical protein | DWZ06_12485 | Not Available | Positive | 3026457 - 3027113 | 25575.3 |
| sdr family nad(p)-dependent oxidoreductase | DWZ06_12490 | Not Available | Positive | 3027118 - 3027930 | 28669.7 |
| mannonate dehydratase | DWZ06_12495 | Not Available | Positive | 3027970 - 3029145 | 44526.6 |
| tonb-dependent receptor | DWZ06_12500 | Not Available | Positive | 3029360 - 3032581 | 118849.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_12505 | Not Available | Positive | 3032586 - 3034448 | 70185.9 |
| protein translocase subunit secdf | DWZ06_12515 | Not Available | Negative | 3036212 - 3039199 | 109278.0 |
| m3 family peptidase | DWZ06_12520 | Not Available | Negative | 3039378 - 3041465 | 78974.4 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

