Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 29 | DWZ06_12415 | Not Available | Positive | 3009409 - 3011292 | 70662.0 |
| dna-protecting protein dpra | DWZ06_12420 | Not Available | Negative | 3011373 - 3012488 | 40940.4 |
| acyl-coa thioesterase | DWZ06_12425 | Not Available | Negative | 3012485 - 3012892 | 15657.8 |
| pp_02452 | DWZ06_12430 | Not Available | Positive | 3012951 - 3013868 | Not Available |
| helicase | DWZ06_12440 | Not Available | Positive | 3014389 - 3015645 | 48863.9 |
| lactaldehyde reductase | DWZ06_12445 | Not Available | Positive | 3015859 - 3017013 | 40916.8 |
| tonb-dependent receptor | DWZ06_12450 | Not Available | Positive | 3017216 - 3020419 | 118624.0 |
| glycerophosphodiester phosphodiesterase | DWZ06_12455 | Not Available | Positive | 3020447 - 3021223 | 29020.2 |
| hypothetical protein | DWZ06_12460 | Not Available | Positive | 3021300 - 3021956 | 24617.2 |
| duf2851 family protein | DWZ06_12465 | Not Available | Negative | 3022024 - 3023289 | 48604.3 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

