Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphopantetheine adenylyltransferase | DWZ06_12355 | Not Available | Positive | 2997595 - 2998050 | 17350.0 |
| s41 family peptidase | DWZ06_12360 | Not Available | Positive | 2998053 - 2999654 | 60797.7 |
| phosphatase pap2 family protein | DWZ06_12365 | Not Available | Negative | 2999758 - 3000369 | 22003.9 |
| succinate dehydrogenase/fumarate reductase cytochrome b subunit | DWZ06_12370 | Not Available | Positive | 3000560 - 3001246 | 25487.5 |
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | DWZ06_12375 | Not Available | Positive | 3001281 - 3003239 | 72651.5 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | DWZ06_12380 | Not Available | Positive | 3003260 - 3004015 | 27308.1 |
| arac family transcriptional regulator | DWZ06_12385 | Not Available | Negative | 3004080 - 3004940 | 33227.9 |
| fimbrillin family protein | DWZ06_12395 | Not Available | Negative | 3005447 - 3006436 | 35806.3 |
| duf5119 domain-containing protein | DWZ06_12400 | Not Available | Negative | 3006485 - 3007480 | 36296.9 |
| duf3575 domain-containing protein | DWZ06_12405 | Not Available | Negative | 3007447 - 3008814 | 52080.2 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

