Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein l,d-transpeptidase | DWZ06_12305 | Not Available | Negative | 2982307 - 2983326 | 38970.9 |
| site-specific integrase | DWZ06_12310 | Not Available | Positive | 2983534 - 2984472 | 36160.6 |
| arac family transcriptional regulator | DWZ06_12315 | Not Available | Positive | 2985282 - 2985776 | 19177.3 |
| hypothetical protein | DWZ06_12320 | Not Available | Positive | 2985821 - 2988748 | 106642.0 |
| hypothetical protein | DWZ06_12325 | Not Available | Positive | 2988836 - 2989357 | 19969.1 |
| tonb-dependent receptor | DWZ06_12330 | Not Available | Positive | 2989682 - 2992450 | 104213.0 |
| acid phosphatase | DWZ06_12335 | Not Available | Positive | 2992461 - 2993432 | 37239.9 |
| sodium:calcium antiporter | DWZ06_12340 | Not Available | Positive | 2993496 - 2994458 | 33558.9 |
| n-acetyltransferase | DWZ06_12345 | Not Available | Positive | 2994533 - 2995669 | 43786.0 |
| type iia dna topoisomerase subunit b | DWZ06_12350 | Not Available | Positive | 2995700 - 2997577 | 70989.7 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

