Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc subunit uvrc | DWZ06_12255 | Not Available | Negative | 2971871 - 2973691 | 69878.8 |
| hypothetical protein | DWZ06_12260 | Not Available | Positive | 2973694 - 2973918 | 8531.47 |
| adenine phosphoribosyltransferase | DWZ06_12265 | Not Available | Negative | 2973921 - 2974445 | 19189.4 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | DWZ06_12270 | Not Available | Negative | 2974505 - 2976376 | 69615.1 |
| flotillin family protein | DWZ06_12275 | Not Available | Negative | 2976523 - 2978223 | 62444.3 |
| hypothetical protein | DWZ06_12280 | Not Available | Negative | 2978249 - 2978782 | 20260.5 |
| rrna maturation rnase ybey | DWZ06_12285 | Not Available | Negative | 2979009 - 2979425 | 15868.9 |
| hypothetical protein | DWZ06_12290 | Not Available | Negative | 2979470 - 2980702 | 44184.2 |
| hypothetical protein | DWZ06_12295 | Not Available | Positive | 2981219 - 2981476 | 9707.39 |
| hypothetical protein | DWZ06_12300 | Not Available | Negative | 2981507 - 2982304 | 29151.1 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

