Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_12205 | Not Available | Positive | 2962951 - 2963943 | 37676.2 |
| hypothetical protein | DWZ06_12210 | Not Available | Positive | 2964014 - 2964463 | 17049.0 |
| hypothetical protein | DWZ06_12215 | Not Available | Negative | 2964538 - 2964915 | 14902.8 |
| sigma-70 family rna polymerase sigma factor | DWZ06_12220 | Not Available | Negative | 2964912 - 2965457 | 21010.2 |
| hypothetical protein | DWZ06_12225 | Not Available | Positive | 2965604 - 2966044 | 16227.5 |
| valine--trna ligase | DWZ06_12230 | Not Available | Negative | 2966225 - 2968852 | 99731.5 |
| nucleoside triphosphate pyrophosphohydrolase | DWZ06_12235 | Not Available | Positive | 2968960 - 2969748 | 30701.6 |
| deoxyribose-phosphate aldolase | DWZ06_12240 | Not Available | Negative | 2969987 - 2970934 | 34798.2 |
| pyrophosphatase | DWZ06_12245 | Not Available | Negative | 2970941 - 2971261 | 12338.7 |
| d-tyrosyl-trna(tyr) deacylase | DWZ06_12250 | Not Available | Negative | 2971261 - 2971713 | 16476.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

