Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| energy transducer tonb | DWZ06_12155 | Not Available | Positive | 2947248 - 2948333 | 41952.6 |
| peptidylprolyl isomerase | DWZ06_12160 | Not Available | Negative | 2948963 - 2951095 | 78893.4 |
| hlyc/corc family transporter | DWZ06_12165 | Not Available | Negative | 2951201 - 2952460 | 47647.0 |
| lps export abc transporter periplasmic protein lptc | DWZ06_12170 | Not Available | Negative | 2952474 - 2953118 | 24876.2 |
| tetratricopeptide repeat protein | DWZ06_12175 | Not Available | Negative | 2953121 - 2954476 | 50268.8 |
| hypothetical protein | DWZ06_12180 | Not Available | Negative | 2954523 - 2955839 | 49216.0 |
| type iii pantothenate kinase | DWZ06_12185 | Not Available | Negative | 2955826 - 2956554 | 26911.9 |
| duf4105 domain-containing protein | DWZ06_12190 | Not Available | Positive | 2956681 - 2957856 | 45049.3 |
| alkaline phosphatase family protein | DWZ06_12195 | Not Available | Positive | 2957853 - 2959436 | 59460.8 |
| preprotein translocase subunit seca | DWZ06_12200 | Not Available | Positive | 2959532 - 2962828 | 125101.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

