Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tlpa family protein disulfide reductase | DWZ06_12105 | Not Available | Positive | 2933162 - 2934502 | 51223.8 |
| susc/raga family tonb-linked outer membrane protein | DWZ06_12110 | Not Available | Positive | 2934532 - 2937813 | 123168.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ06_12115 | Not Available | Positive | 2937826 - 2939268 | 54928.9 |
| peptidylprolyl isomerase | DWZ06_12120 | Not Available | Negative | 2939416 - 2939994 | 21017.5 |
| hypothetical protein | DWZ06_12125 | Not Available | Positive | 2940350 - 2940724 | 14035.0 |
| dihydroxy-acid dehydratase | DWZ06_12130 | Not Available | Positive | 2941135 - 2942937 | 64117.2 |
| biosynthetic-type acetolactate synthase large subunit | DWZ06_12135 | Not Available | Positive | 2943037 - 2944734 | 61841.6 |
| acetolactate synthase small subunit | DWZ06_12140 | Not Available | Positive | 2944745 - 2945299 | 21284.6 |
| acyl-[acyl-carrier-protein] thioesterase | DWZ06_12145 | Not Available | Positive | 2945299 - 2946042 | 28488.1 |
| ketol-acid reductoisomerase | DWZ06_12150 | Not Available | Positive | 2946077 - 2947120 | 38168.5 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

