Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tpm domain-containing protein | DWZ06_12055 | Not Available | Negative | 2923734 - 2924654 | 33358.2 |
| alpha/beta hydrolase | DWZ06_12060 | Not Available | Negative | 2924651 - 2925601 | 36614.3 |
| shikimate dehydrogenase | DWZ06_12065 | Not Available | Negative | 2925609 - 2926349 | 27732.7 |
| demethylmenaquinone methyltransferase | DWZ06_12070 | Not Available | Negative | 2926368 - 2927105 | 27936.8 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | DWZ06_12075 | Not Available | Negative | 2927198 - 2928142 | 35902.1 |
| phoh family protein | DWZ06_12080 | Not Available | Negative | 2928163 - 2929167 | 37733.4 |
| hypothetical protein | DWZ06_12085 | Not Available | Positive | 2929325 - 2929999 | 24792.2 |
| trna pseudouridine(38-40) synthase trua | DWZ06_12090 | Not Available | Positive | 2930004 - 2930807 | 30885.8 |
| dna metabolism protein | DWZ06_12095 | Not Available | Negative | 2930773 - 2931540 | 30614.9 |
| putative dna modification/repair radical sam protein | DWZ06_12100 | Not Available | Negative | 2931537 - 2932805 | 48564.8 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

