Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotidyltransferase family protein | DWZ06_12005 | Not Available | Negative | 2914324 - 2915169 | 32119.8 |
| phosphotransferase | DWZ06_12010 | Not Available | Negative | 2915166 - 2916596 | 55485.1 |
| purine permease | DWZ06_12015 | Not Available | Negative | 2916699 - 2918030 | 46640.3 |
| xanthine phosphoribosyltransferase | DWZ06_12020 | Not Available | Negative | 2918035 - 2918601 | 20888.7 |
| hypothetical protein | DWZ06_12025 | Not Available | Positive | 2918958 - 2919281 | 11727.4 |
| ytxh domain-containing protein | DWZ06_12030 | Not Available | Positive | 2919487 - 2919735 | 9341.14 |
| nitroreductase family protein | DWZ06_12035 | Not Available | Negative | 2919823 - 2920452 | 23122.0 |
| dipeptidase | DWZ06_12040 | Not Available | Negative | 2920465 - 2921817 | 49823.9 |
| chorismate synthase | DWZ06_12045 | Not Available | Negative | 2921831 - 2922907 | 39168.8 |
| lema family protein | DWZ06_12050 | Not Available | Negative | 2923116 - 2923697 | 21752.9 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

