Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF29-13 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1434359 bp
Thymine Count
1406831 bp
Guanine Count
1033248 bp
Cytosine Count
1035378 bp
Genome Length
4910436 bp
Protein-coding Genes
3936 genes
Non-Coding Genes
74 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ06_11950 | Not Available | Negative | 2902412 - 2902591 | 6795.28 |
| hypothetical protein | DWZ06_11955 | Not Available | Negative | 2902536 - 2902658 | 4290.01 |
| hypothetical protein | DWZ06_11960 | Not Available | Negative | 2902963 - 2904669 | 63731.6 |
| fimbrillin family protein | DWZ06_11965 | Not Available | Negative | 2904735 - 2905805 | 39488.9 |
| duf5119 domain-containing protein | DWZ06_11975 | Not Available | Negative | 2907118 - 2908125 | 37830.5 |
| hypothetical protein | DWZ06_11980 | Not Available | Negative | 2908122 - 2908460 | 13051.2 |
| recombinase | DWZ06_11985 | Not Available | Negative | 2908853 - 2909941 | 41882.2 |
| duf1282 domain-containing protein | DWZ06_11990 | Not Available | Positive | 2910316 - 2910885 | 21068.2 |
| ssra-binding protein | DWZ06_11995 | Not Available | Positive | 2910885 - 2911337 | 17572.4 |
| methionine synthase | DWZ06_12000 | Not Available | Positive | 2911375 - 2914128 | 100894.0 |
Pathways
216 pathways
Health Effects
No health effects information available for this bacterium.

